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A Stochastic Production Frontier Estimator
of the Degree of Oligopsony Power in the U.S. Cattle
Industry A Stochastic Production Frontier Estimator of the Degree of Oligopsony Power in the U.S. Cattle Industry
Dimitrios Panagiotou and Athanassios Stavrakoudis
Journal of Industry, Competition and Trade, 2016, in press:1-13
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Price Dependence between Different Beef Cuts and Quality Grades: A Copula Approach at the Retail Level for the U.S. Beef Industry Price Dependence between Different Beef Cuts and Quality Grades: A Copula Approach at the Retail Level for the U.S. Beef Industry
Dimitrios Panagiotou and Athanassios Stavrakoudis
J Agricultural & Food Industrial Organization, 2016, 14:1-11
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Price asymmetry between different pork cuts
in the USA: a copula approach Price asymmetry between different pork cuts in the USA: a copula approach
Dimitrios Panagiotou and Athanassios Stavrakoudis
Agricultural and Food Economics, 2015, 3:6
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Molecular dynamics study of the human insulin B peptide SHLVEALYLVCGERGG complexed with HLA-DQ8 reveals important hydrogen bond interactions Molecular dynamics study of the human insulin B peptide SHLVEALYLVCGERGG complexed with HLA-DQ8 reveals important hydrogen bond interactions
Athanassios Stavrakoudis
Molecular Simulation, 2011, 37:837-845
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Configurational entropy reallocation and complex loop dynamics
of the mosquito-stage Pvs25 protein complexed with the
Fab fragment of the malaria transmission blocking antibody 2A8 Configurational entropy reallocation and complex loop dynamics of the mosquito-stage Pvs25 protein complexed with the Fab fragment of the malaria transmission blocking antibody 2A8
Athanassios Stavrakoudis and Ioannis G. Tsoulos
Journal of Chemical Theory and Computation, 2011, 7:515-524
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Insights  into  the  structure  of  the  LC13  TCR  complexed  with the
HLA-B8-EBV  peptide  complex  with  molecular  dynamics simulations Insights into the structure of the LC13 TCR complexed with the HLA-B8-EBV peptide complex with molecular dynamics simulations
Athanassios Stavrakoudis
Cell Biochemistry and Biophysics, 2011, 60:283-295
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Homology modeling and molecular dynamics simulations of MUC1-9/H-2Kb complex suggest novel binding interactions Homology modeling and molecular dynamics simulations of MUC1-9/H-2Kb complex suggest novel binding interactions
Athanassios Stavrakoudis, Ioannis G. Tsoulos, Katalin Uray, Ferenz Hudesz and Vasso Apostolopoulos
Journal of Molecular Modeling, 2011, 17:1817-1829
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Eucb: A C++ program for molecular dynamics trajectory analysis Eucb: A C++ program for molecular dynamics trajectory analysis
Ioannis G. Tsoulos and Athanassios Stavrakoudis
Computer Physics Communications, 2011, 182:834-841
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Cis-trans isomerization of the Epstein-Barr virus determinant peptide EENLLDFVRF after DM1 TCR recognition of HLA-B*4405/peptide complex Cis-trans isomerization of the Epstein-Barr virus determinant peptide EENLLDFVRF after DM1 TCR recognition of HLA-B*4405/peptide complex
Athanassios Stavrakoudis
FEBS Letters, 2011, 585:485-491
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Conformational Flexibility in Designing Peptides for Immunology: The Molecular Dynamics Approach Conformational Flexibility in Designing Peptides for Immunology: The Molecular Dynamics Approach
Athanassios Stavrakoudis
Curr Comp-Aided Drug Des, 2010, 6:207-222
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On locating all roots of systems of nonlinear equations inside bounded domain using global optimization methods On locating all roots of systems of nonlinear equations inside bounded domain using global optimization methods
Ioannis G. Tsoulos and Athanassios Stavrakoudis
Nonlinear Analysis: Real World Applications, 2010, 11:2465-2471
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Enhancing PSO methods for global optimization Enhancing PSO methods for global optimization
Ioannis G. Tsoulos and Athanassios Stavrakoudis
Applied Mathematics and Computation, 2010, 216:2988-3001
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Computational modelling and molecular dynamics simulations of a cyclic peptide mimotope of the CD52 antigen complexed with CAMPATH-1H antibody Computational modelling and molecular dynamics simulations of a cyclic peptide mimotope of the CD52 antigen complexed with CAMPATH-1H antibody
Athanassios Stavrakoudis
Molecular Simulation, 2010, 26:127-137
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Molecular dynamics simulations of BcZBP, a deacetylase from Bacillus cereus: Active site loops determine substrate accessibility and specificity Molecular dynamics simulations of BcZBP, a deacetylase from Bacillus cereus: Active site loops determine substrate accessibility and specificity
Vasiliki Fadouloglou, Athanassios Stavrakoudis, Vassilis Bouriotis, Michael Kokkinidis and Nicholas Glykos
Journal of Chemical Theory and Computation, 2009, 5:3299-3311
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Conformational studies of the 313-320 and 313-332 peptide fragments derived from the αIIb Subunit of Integrin Receptor with Molecular Dynamics Simulations Conformational studies of the 313-320 and 313-332 peptide fragments derived from the αIIb Subunit of Integrin Receptor with Molecular Dynamics Simulations
Athanassios Stavrakoudis
Int J Pept Res Ther, 2009, 15:263-272
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Molecular dynamics simulation of antimicrobial peptide arenicin-2: 
β-Hairpin stabilization by noncovalent interactions Molecular dynamics simulation of antimicrobial peptide arenicin-2: β-Hairpin stabilization by noncovalent interactions
Athanassios Stavrakoudis, Ioannis G. Tsoulos, Zakhar O. Shenkarev and Tatiana V. Ovchinnikova
Biopolymers Peptide Science, 2009, 92:143-155
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Insights into the structure of the PmrD protein with molecular dynamics simulations Insights into the structure of the PmrD protein with molecular dynamics simulations
Vasileios A. Tatsis, Ioannis G. Tsoulos, Christos S. Krinas, Charalampos Alexopoulos and Athanassios Stavrakoudis
Int J Biol Macromol, 2009, 44:393-399
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Molecular dynamics simulations of the TSSPSAD peptide antigen in free and bound with CAMPATH-1H Fab antibody states: the importance of the β-turn conformation Molecular dynamics simulations of the TSSPSAD peptide antigen in free and bound with CAMPATH-1H Fab antibody states: the importance of the β-turn conformation
Vasileios A. Tatsis, Ioannis G. Tsoulos and Athanassios Stavrakoudis
Int J Pept Res Ther, 2009, 15:1-7
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A disulfide linked model of the complement protein C8γ complexed with C8α indel peptide A disulfide linked model of the complement protein C8γ complexed with C8α indel peptide
Athanassios Stavrakoudis
Journal of Molecular Modeling, 2009, 15:165-171
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Computational studies on the backbone-dependent side chain orientation induced by the (S,S)-CXC motif Computational studies on the backbone-dependent side chain orientation induced by the (S,S)-CXC motif
Athanassios Stavrakoudis and Vasileios Tsikaris
Journal of Peptide Science, 2008, 14:1259-1270
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Molecular dynamics simulations of an apolipoprotein A-I derived peptide in explicit water                                                                Molecular dynamics simulations of an apolipoprotein A-I derived peptide in explicit water
Athanassios Stavrakoudis
Chemical Physics Letters, 2008, 461:294-299
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Molecular Dynamics as a pattern recognition tool: An automated process detects peptides that preserve the 3D arrangement of Trypsin's Active Site Molecular Dynamics as a pattern recognition tool: An automated process detects peptides that preserve the 3D arrangement of Trypsin's Active Site
V. A. Tatsis, A. Stavrakoudis, I. N. Demetropoulos
Biophysical Chemistry, 2008, 133:36-44
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T-cell epitopes of the La/SSB autoantigen: Prediction based on the homology modeling of HLA-DQ2/DQ7 with the insulin-B peptide/HLA-DQ8 complex T-cell epitopes of the La/SSB autoantigen: Prediction based on the homology modeling of HLA-DQ2/DQ7 with the insulin-B peptide/HLA-DQ8 complex
Aggeliki Kosmopoulou, Metaxia Vlassi, Athanassios Stavrakoudis, Constantinos Sakarellos, Maria Sakarellos-Daitsiotis
Journal of Computational Chemitry, 2006, 27:1033-1044
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Empirical size and power of some diagnostic tests applied to a distributed lag model Empirical size and power of some diagnostic tests applied to a distributed lag model
Dimitris Hatzinikolaou and Athanassios Stavrakoudis
Empirical Economics, 2006, 31:631-643
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Influence of sequential oligopeptide carriers on the bioactive structure of conjugated epitopes: Comparative study of the conformation of a Herpes simplex virus glycoprotein gD-1 epitope in the free and conjugated form, and protein built-in crystal struct Influence of sequential oligopeptide carriers on the bioactive structure of conjugated epitopes: Comparative study of the conformation of a Herpes simplex virus glycoprotein gD-1 epitope in the free and conjugated form, and protein built-in crystal struct
Dimitrios Krikorian,Athanassios Stavrakoudis, Nikolaos Biris, Constantinos Sakarellos, David Andreu, Eliandre de Oliveira, Gábor Mezö, Zsuzsa Majer, Ferenc Hudecz , Sytske Welling-Wester, Manh Thong Cung, Vassilios Tsikaris
Biopolymers Peptide Science, 2006, 84:383-399
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LysinebasedTrypsinActSite(LysTAS): A configurational tool of the TINKER software to evaluate Lysine based branched cyclic peptides as potential chymotrypsin-mimetics LysinebasedTrypsinActSite(LysTAS): A configurational tool of the TINKER software to evaluate Lysine based branched cyclic peptides as potential chymotrypsin-mimetics
V. A. Tatsis, A. Stavrakoudis, I. N. Demetropoulos
Molecular Simulation, 2006, 32:643-644
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 	A New Variant of RESET for Distributed Lag Models A New Variant of RESET for Distributed Lag Models
Dimitris Hatzinikolaou and Athanassios Stavrakoudis
Economics Bulletin, 2005, 3:1-4
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The relative orientation of the Arg and Asp side chains defined by a pseudodihedral angle as a key criterion for evaluating the structure-activity relationship of RGD peptides The relative orientation of the Arg and Asp side chains defined by a pseudodihedral angle as a key criterion for evaluating the structure-activity relationship of RGD peptides
Sarantos Kostidis, Athanassios Stavrakoudis, Nikolaos Biris, Demokritos Tsoukatos, Constantinos Sakarellos, Vassilios Tsikaris
Journal of Peptide Science, 2004, 10:494-509
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Synthesis of a proline-rich [60]fullerene peptide with potential biological activity Synthesis of a proline-rich [60]fullerene peptide with potential biological activity
Panagiota Sofou, Yiannis Elemes, Eugenia Panou-Pomonis, Athanasios Stavrakoudis,Vasilios Tsikaris, Constantinos Sakarellos, Maria Sakarellos-Daitsiotis, Michele Maggini,Fernando Formaggiob and Claudio Toniolo
Tetrahedron, 2004, 60:2823-2828
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The Ac-RGD-NH<sub>2</sub> peptide as a probe of slow conformational exchange of short linear peptides in DMSO The Ac-RGD-NH2 peptide as a probe of slow conformational exchange of short linear peptides in DMSO
Nikolaos Biris, Athanassios Stavrakoudis, Anastasia S. Politou, Emmanuel Mikros, Maria Sakarellos-Daitsiotis, Constantinos Sakarellos and Vassilios Tsikaris
Biopolymers, 2003, 69:72-86
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Computational Screening of Branched Cyclic Peptide Motifs as Potential Enzyme Mimetics Computational Screening of Branched Cyclic Peptide Motifs as Potential Enzyme Mimetics
Athanassios Stavrakoudis, Sevasti Makropoulou, Vassilios Tsikaris, Maria Sakarellos-Daitsiotis, Constantinos Sakarellos and Ioannis N. Demetropoulos
Journal of Peptide Science, 2003, 9:145-155
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A three-residue cyclic scaffold of non-RGD containing peptide analogues as platelet aggregation inhibitors: Design, synthesis, and structure-function relationships A three-residue cyclic scaffold of non-RGD containing peptide analogues as platelet aggregation inhibitors: Design, synthesis, and structure-function relationships
Athanassios Stavrakoudis, George Bizos, Damianos Eleftheriadis, Aggeliki Kouki, Eugenia Panou-Pomonis, Maria Sakarellos-Daitsiotis, Constantinos Sakarellos, Demokritos Tsoukatos, Vassilios Tsikaris
Biopolymers, 2001, 56:20-26
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Design, synthesis and catalytic activity of a serine protease synthetic model. Design, synthesis and catalytic activity of a serine protease synthetic model.
Athanassios Stavrakoudis, Ioannis N. Demetropoulos, Constantinos Sakarellos, Maria Sakarellos-Daitsiotis, Vassilios Tsikaris.
Int J Pept Res Ther, 1997, 4:481-487
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